Safety assessments on nuclear power plants (NPPs) subjected to an aircraft impact (AI) caused by terrorists are pivotal focuses for amelioration of present. To date, most studies have mainly focused on structure responses and the integrity of the containment building at a nuclear island (NI) subjected to AI. However, the safety assessment of internal equipment and components by shock vibration as well as the structure damage induced by AI are also important. In this study, aircraft impact analyses (AIA) of primary auxiliary buildings (PABs) were carried out using both the force–time history method and the missile–target interaction method. For the AIA, the jet fuel was taken into account by using the added mass modeling method and the smooth particles hydrodynamics (SPH) method, respectively. In addition, the floor response spectra (FRS) and the structural integrity of the external wall of the PAB against an AI were analyzed. Finally, the difference in the FRS at the location of the components on both sides of the bay was analyzed.